, 2005). All strains were epidemiologically unlinked, except for DG70/2, DG11/2 and DG113/5, which were from cattle and sheep of the same farm, and CB9853 and CB9857, which were from two cattle belonging to the same herd. Typing of O (lipopolysaccharide) and H (flagellar) antigens was performed as described (Beutin et al., 2004). Nonmotile E. coli strains were analysed for their flagellar

(fliC) genotypes by PCR and restriction fragment length polymorphisms (RFLP) of HhaI-digested fliC PCR products (Beutin et al., 2005). O26:H11 and O26:NM strains that were identified to carry a fliCH11 gene are designated as O26:[H11]. Fermentation of rhamnose and dulcitol was tested as described (Leomil et al., 2005). Production of Stx was Buparlisib mw tested with the Vero cell cytotoxicity assay and an enzyme immunoassay (Ridascreen-EIA; R-Biopharm AG, Darmstadt, Germany) www.selleckchem.com/products/bay80-6946.html as described (Beutin et al., 2007). Detection of α- and enterohaemolytic phenotypes of bacteria was performed on washed sheep blood (enterohaemolysin) agar (Beutin et al., 2007). Analysis and subtyping of e-hlyA, eae and stx genes

was performed by PCR/RFLP as described (Beutin et al., 2004, 2008; Brandal et al., 2007). All strains were screened by PCR for additional virulence genes, such as STIa and STIb (heat-stable enterotoxins), LTI (heat-labile enterotoxins), ipaH (invasion plasmid antigen of enteroinvasive E. coli), aggR (adherence factor of enteroaggregative E. coli), bfpB (bundle-forming pili), saa (STEC-autoagglutinating adhesin), nleB (non-LEE effector protein B), stcE (zinc metalloprotease StcE), stcE-O103 (novel sequence PAK5 showing homology to stcE, first detected in an E. coli O103 strain; GenBank AM901563), cdt duplex (cytolethal distending factor) and subA (subtilase cytotoxin) (Brandal et al., 2007; L.T. Brandal et al., unpublished data). PFGE was performed using the standardized PulseNet protocol published previously (Gerner-Smidt & Scheutz, 2006). Agarose-embedded DNA was digested with 50 U of XbaI (Roche Diagnostics GmbH, Mannheim, Germany). Salmonella serotype Braenderup strain H9812 (Centers for Disease Control and Prevention, Atlanta) was used as a universal molecular size

marker. PFGE patterns were analysed and compared using bionumerics software version 5.1 (Applied Maths, Ghent, Belgium). A dendrogram was generated using the band-based Dice similarity coefficient with a 1.5% band position tolerance and the unweighted pair group method with arithmetic mean clustering. Twelve E. coli O26 control strains were used to determine the experimental variation between duplicate experiments. On the basis of the achieved results, a cut-off value of similarity was established for typing identical strains with identical outputs. Total DNA of E. coli was prepared from overnight cultures using the RT Spin Bacteria DNA minikit (Invitek, Berlin, Germany). MLVA was performed as described previously by Lindstedt et al.