Sepantronium research buy Interestingly, region I in strain Beluga differed from both CDC66177 and Alaska E43 while region II was identical to that found in Alaska E43. While the mechanism of toxin gene cluster insertion into the rarA operon is unclear, the sequence similarity in region II between strains Beluga and Alaska E43 suggests at least a partial similarity in the origin of Linsitinib purchase the recombination event that results in the insertion of the toxin gene cluster. However, strain CDC66177 lacks similarity to either strain Beluga or Alaska E43 at either region suggesting that the recombination event resulting in the insertion of the toxin gene cluster in strain CDC66177

originated differently compared to strains Beluga or Alaska E43. Analysis of the genome sequence data explains the unexpected ~1.7 kb band hybridized by the rarA probe in strain CDC66177. The presence of an XbaI site XMU-MP-1 clinical trial within the toxin gene cluster of both CDC66177 and Alaska E43 and an additional site downstream of the larger rarA fragment in strain CDC66177 yield an ~1.7 kb fragment. Notably the genome sequence of strain 17B also demonstrates the presence of a XbaI site downstream of the intact rarA gene. Similar to other type E toxin gene clusters, strain CDC66177 contains an intact rarA gene that

does not hybridize the rarA probe used in our studies. BLAST analysis of this gene demonstrated 98% nucleotide similarity with the gene present in Alaska E43. Since the bont/E gene in strain CDC66177 displayed significant

divergence compared to other reported bont/E genes, we compared the nucleotide sequences of the remaining toxin gene cluster components (ntnh, p47, orfX1-3) to those found in Alaska E43 and Beluga (Table 1). While these genes are nearly identical in Alaska E43 nearly and Beluga, the genes in CDC66177 ranged from 88.2-96.9% nucleotide identity compared to those in Alaska E43 and/or Beluga. Table 1 Pairwise alignment of toxin gene cluster components Gene % Nucleotide Identity Alaska E43/CDC66177 Beluga E/CDC66177 Alaska E43/Beluga E orfX3 94.9 94.9 100 orfX2 91.1 91.1 99.5 orfX1 94.9 94.9 100 p47 88.2 88.2 100 ntnh 96.8 96.9 99.9 bont/E 93.9 94.1 99.3 In order to further investigate the genomic sequence of strain CDC66177, the average nucleotide identity (ANI) of this strain was compared to Alaska E43 and Beluga. Briefly, 1,020 nucleotide fragments of the query genome were compared to the subject genome using BLAST to determine the ANI value [17]. Richter and Rosselló-Móra [17] proposed an ANI of 95-96% as the boundary of considering two genomes as belonging to a single bacterial species. While comparison of the genomes of strains Alaska E43 and Beluga resulted in an ANI > 97%, comparison of strain CDC66177 with Alaska E43 and Beluga resulted in ANI values between 93-94% (Table 2). Interestingly, comparison of strain CDC66177 with 17B displayed > 98% ANI while comparison of either Alaska E43 or Beluga with 17B resulted in ANI values < 94%.