Of note, the corresponding region in S. saprophyticus ATCC 15305 is longer (26 kb) and contains an arsenic resistance operon arsRBC and a putative lipase, both absent from pSSAP2. This region is also framed by two copies of the IS element IS431, which is frequently involved in the recombination-mediated integration of transposons and plasmids in methicillin-resistant S. aureus (MRSA) chromosomes [21, 22]. Therefore, this region is likely to be an integrative
plasmid of strain ATCC 15305; positioned upstream is a truncated integrase (SSP1642), for which an intact copy can be found in the S. saprophyticus MS1146 chromosome (Figure 1). Another GSK872 price region of pSSAP2, ranging from position 21 529 to 33 235, shares ~99% nucleotide identity Osimertinib with plasmid pSSP1, which was originally described from S. saprophyticus ATCC 15305 [8]. The most notable feature of this region is the presence of a gene encoding for a LPXTG domain containing protein that we have designated sssF (see below). Sequence analysis of SssF staphylococcal Mdivi1 molecular weight homologues The S. saprophyticus MS1146 sssF gene is 1962 bp in length and the full-length translated SssF (S . s aprophyticus surface protein F) protein contains 654 residues
with a predicted molecular mass of 73.5 kDa (Figure 2A). SssF contains a predicted signal peptide of 45 residues (SignalP) [23] and an LPDTG anchor motif at the C terminus (Figure 2A), involved with covalent attachment of the mature protein to the cell wall. No conserved functional protein domains were detected, except for a Thalidomide possible albumin-binding GA module
(Pfam PF01468, residues 58-109, E-value = 0.00039). Figure 2 Sequence analysis of SssF. (A) Primary structure of the S. saprophyticus MS1146 SssF protein. The putative signal peptide, the corresponding gene region used for PCR screening, the region used in the multiple alignment (Additional file 2: Figure S1), the region used for polyclonal antibody raising and the LPDTG sortase anchor motif are indicated. (B) Structural prediction of the mature form of SssF. Residues coloured in red and in blue are predicted to adopt α-helical and β-strand conformations respectively. (C) Crystal structures of tropomyosin and alpha-actinin identified as likely structurally similar to SssF. Sequence searches using the SssF amino acid sequence revealed similar proteins in other staphylococci. As expected, the SssF homologue encoded by pSSP1 in S. saprophyticus ATCC 15305 is near-identical at the protein level with only seven amino acid substitutions. Of note, every other sequenced staphylococcal genome contains an sssF-like gene, all chromosomally located except in S. saprophyticus (Additional file 2: Figure S1).